rs260042128 SNP Detail

Summary

• ID
  rs260042128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132649862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCACCTT GCACAGCTGC
  TGCCCCTGAG ACAGCGCCTC GAAGGGGAAG CGCTGGTGGC ACTTGGTGCA GGCGTACAGC
  GCCGCCATGT CCGGCCCGGG CCGTGATCGC CGCCGCCCCT CCCGCCGGCC CGCCGCTTTA
  TCTGACAGTC TCAGGCACAA CCTGGCGGCG GCGGCCGGGC CGCGGGCTGC GGAGGGCGGG
  Y
  GGGCGAGGGC GGGCCGCGGG CGCAGGGGCG GGCTCTCCGG TGCTCAGAGG CCGTTCGCTG
  GCTCGCGTGG ACGTCGATCA CGCGGGAGGG GGCGGAACGT GGAGTTCCCG ACGGCTCTGA
  TTCGGTCCGG GTTGGACTAC GCCACTGTGA CGCTCGGGGC CGCGATTATG TAAAGCGCAG
  TCACGCGGGG GCGCCGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363304713	MGP_WTSI_4_132478466	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260042128					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363304713	MGP_WTSI_4_132478466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132649862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	within coordinates
Fam76a	family with sequence similarity 76, member A	mRNA-UTR
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	128 bp upstream
Rr601111	regulatory region 601111	69 bp distal
Rr601112	regulatory region 601112	within coordinates
Rr601113	regulatory region 601113	28 bp distal
Rr601114	regulatory region 601114	177 bp proximal
Tssr43726	transcription start site region 43726	1404 bp upstream
Tssr43727	transcription start site region 43727	7 bp upstream
Tssr43728	transcription start site region 43728	within coordinates
Tssr43729	transcription start site region 43729	39 bp downstream
Tssr43730	transcription start site region 43730	54 bp downstream
Tssr43731	transcription start site region 43731	69 bp downstream
Tssr43732	transcription start site region 43732	76 bp downstream