rs260033979 SNP Detail

Summary

• ID
  rs260033979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGAGCAG GAAGGGAGCT
  GGTAGCACAA GGCTTACTTT TTTTTTTTTT TTTCTTAATA TTTGAGACTA GGTCTGTACA
  CCAGGCCCAT AACTCAAATC CGGAACTCAA ACTTGTTATG TATCCAGAGG CTGATCTTAA
  CTTTATGATG GCCCTGCCAC AACTTCCCAA GTATCTGGGA TTGCAAGTCT GTGTTGCCTC
  S
  CCTGGTGTTT TAAATCTCTA CACATTCTTT CGCATGTGGG GATGTAGCTC AGTGGTAGAG
  CGCATGCTTA GCATGCATGA GGTCCTGGGT TCGATCTCCA GGTTTTTTTT TTTTAAATCC
  ATTTACACAC TTAAGTGCTT CTATGTGTTA CATTTTTAAT ATTAAAGAGG CCCTTGCCGG
  GCGTGGTGGC GCACGCCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363295756	MGP_WTSI_4_132071885	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260033979					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363295756	MGP_WTSI_4_132071885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243281 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	38 bp upstream
Rr377207	regulatory region 377207	within coordinates
Rr600995	regulatory region 600995	1181 bp distal
Rr600996	regulatory region 600996	680 bp distal
Rr600997	regulatory region 600997	1019 bp distal
Rr600998	regulatory region 600998	within coordinates
Rr600999	regulatory region 600999	1804 bp proximal
Tssr39372	transcription start site region 39372	142 bp downstream
Tssr43681	transcription start site region 43681	536 bp upstream