rs260018672 SNP Detail

Summary

• ID
  rs260018672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116644990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGCCCA GTCACATTTA
  AGTCCAGGCA GTAAAGGCTG CTTAGTAAAT ATGTGAGGGG GGGAAGGGGG GGAAGAGGGC
  ACAGGGGAAA GAGGAGGGGG GGAGAAGAAA GGGGGAGAGG AGAGAGAGAG AGGAGAGAGG
  GGAAAGAGGG GAGAGAAGAG AGAGGGAAGA GAGGGGAGAG AGGGGAAAGA GAGGGGGAGA
  Y
  GAGAGGGGGA GGGAAAGAGA GAGAGGAAGA AGAGAAAAGA GAAGAGAAGA GAAGAGAAGA
  GGAGGGGAGG GGAGGGGAGG GGAGGGGAGG GGAGGGGAGG GGAGGGGAGG GGAGGGGAGG
  GGAGGGGAGG GGGTAGGGAG AAACAATAAT CAGAGAGAAA GGGAGGAGAC CAAATGGAGC
  ACACACTTGC AAGACAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss369778363	MGP_WTSI_6_116618047	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	T	T	T	C	C	C	C	T	C	C	C	T	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs260018672					SNP	C	C	C	C	C	T	C	C	T	T	T	C	C	C	C	T	C	C	C	T	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369778363	MGP_WTSI_6_116618047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116644990 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	562 bp proximal
Rr637229	regulatory region 637229	1133 bp proximal
Rr637230	regulatory region 637230	1955 bp proximal
Tssr58382	transcription start site region 58382	1668 bp downstream
Tssr58383	transcription start site region 58383	1356 bp upstream
Tssr58384	transcription start site region 58384	1394 bp upstream
Tssr62604	transcription start site region 62604	338 bp downstream
Tssr62605	transcription start site region 62605	372 bp downstream