rs260007702 SNP Detail

Summary

• ID
  rs260007702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90735023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCAGCCC CTGCACAGGG
  AGAGAAAAGG CACAAAGGCG CGGGTGAGAC TCGGGGAGGT CTCCGTGCTG CCCGTGGTCT
  CAACCTGCTG CTGTTCCTTG CTCACCCCTG CCTACGGAAG CGGCCCCCAA GAGCCCACGA
  CACCAGACCC TGGCTGCAGC CGCCGCCATG TTCCTTAGTG TGCCGACTAA GTAGCCGGAG
  R
  ACACACGCAG GCCACGGAGC CCCAAGGGCA CGGACCGGAA GTGGAAATGT GCAGTGACTC
  TTCTTCCGGG CGGACGCGGG GCGGGAAGCA GAGGTTCCGG ATCTGAGCCC TGGCATGAAA
  GGAGGTATCG CAGGTAAGAA AGACCCGCAG GTGGGGAAAC CGTGAGGTGT ACGTAGCCCT
  ATCTCGGTAC AGCGGAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354804254	MGP_WTSI_2_90744836	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260007702					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354804254	MGP_WTSI_2_90744836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90735023 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kbtbd4	kelch repeat and BTB (POZ) domain containing 4			90 bp upstream
Ndufs3	NADH:ubiquinone oxidoreductase core subunit S3			mRNA-UTR
				Noncoding-Transcript-Variant
Rr560593	regulatory region 560593			within coordinates
Rr560594	regulatory region 560594			138 bp proximal
Tssr18797	transcription start site region 18797			54 bp upstream
Tssr18798	transcription start site region 18798			77 bp upstream
Tssr18799	transcription start site region 18799			110 bp upstream
Tssr18800	transcription start site region 18800			364 bp upstream
Tssr18801	transcription start site region 18801			381 bp upstream
Tssr25139	transcription start site region 25139			within coordinates
Tssr25140	transcription start site region 25140			240 bp downstream