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rs260002123 SNP Detail
Summary
  • ID
    rs260002123
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr6:94259832 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGGCAGTG GCAAGCCACC
    AGCTCCGTGA GCTCATCCAT CCCGTAAGGG GCTGGGGGAA GCGTCCACCT TAGCCTCCCT
    CAGTTCCCCA TCTGCCTTAA GGTGAAGGCG AGGCTGCGCA GCACTAGGTG GCTACGACCT
    AGAAGTTGGC AAACCAGACC TGGGAAGCAT CTCCCCGCTT CCCGGCGCAA CCCCGGCCCC
    W
    GCCCGCCACG CAGGTGGGCG CACAGCCCAC AACCTCACAA CTTTGAGTGC ATCTGGTCCG
    GGCCTCAACT TTGGCTCACA GCACTCGGAG CAAACGGCGC CCCCTCAGGC CTCCCCTCTT
    TTTCGGGGTG CGCCCCCCAA AGGCACGCCC CGTCTTACCT TGTCTGACGG CTTTGAAGGT
    GACGGCCTCC TTGCAGCTGT                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369251509 MGP_WTSI_6_94232845 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260002123 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss369251509 MGP_WTSI_6_94232845 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:94259832 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17759 CpG island 17759 within coordinates
Gm31661 predicted gene, 31661 1160 bp upstream
Magi1 membrane associated guanylate kinase, WW and PDZ domain containing 1 Intron
Noncoding-Transcript-Variant
Rr634854 regulatory region 634854 383 bp distal
Rr634855 regulatory region 634855 127 bp proximal
Rr634856 regulatory region 634856 461 bp proximal
Rr634857 regulatory region 634857 1056 bp proximal
Rr634858 regulatory region 634858 1226 bp proximal
Rr634859 regulatory region 634859 1727 bp proximal
Tssr62172 transcription start site region 62172 664 bp downstream
Tssr62173 transcription start site region 62173 724 bp downstream
Tssr62174 transcription start site region 62174 890 bp downstream
Tssr62175 transcription start site region 62175 949 bp downstream
Tssr62176 transcription start site region 62176 984 bp downstream
Tssr62177 transcription start site region 62177 997 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory