rs259976004 SNP Detail

Summary

• ID
  rs259976004
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113053906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAACACGC CATTTGTGTT TTCACACACG GCGGGAGGAA
  AAGAAGCCAA TCAGCGACGA GACGTCGGCC GGAAGCGCTC CTCCGCTGCC CCCCCCCCCC
  S
  GAGCCATGGC CGCGTCCGGT GGAGACTTTT CCGCTCCCTT CTCCCTCCCC CTCCGGTTGC
  TGCAGGGCGG ACCGCATTCC TGCCCACCAC CCGCTTGCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321909782	CHEV_6_113026939	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259976004					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113053906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	within coordinates
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	within coordinates
Rr636449	regulatory region 636449	558 bp distal
Rr636450	regulatory region 636450	within coordinates
Rr636451	regulatory region 636451	357 bp proximal
Rr636452	regulatory region 636452	369 bp proximal
Rr636453	regulatory region 636453	705 bp proximal
Setd5	SET domain containing 5	420 bp upstream
Tssr58166	transcription start site region 58166	409 bp upstream
Tssr58167	transcription start site region 58167	442 bp upstream
Tssr58168	transcription start site region 58168	510 bp upstream
Tssr58169	transcription start site region 58169	622 bp upstream
Tssr58170	transcription start site region 58170	686 bp upstream
Tssr62428	transcription start site region 62428	618 bp upstream
Tssr62429	transcription start site region 62429	236 bp downstream
Tssr62430	transcription start site region 62430	292 bp downstream