rs259955668 SNP Detail

Summary

• ID
  rs259955668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113895750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAATTTT GTTGGTTTTT
  CTTTTTCGAG ACAGGGTTTC TCTGTGTAGC CTGGTCTGTC CTGGGATTCA GGCTGTAGAT
  CAGGCTGGCC TTGAACTCCT GAGATCCCAC CTGCCTGAAC CTCCTGAGTG CTGGGAGCTG
  CCATGAGCCT CTGGCTCAAA CAAGAATTTT AAAGCAGCCA TTCTTAAAAA TATTTCTTTT
  Y
  TTTTTTTTTT TTTTTTTTGT ACTGCTCTGG TTTTTTGAAG TTTTTTTTTT TTAATTAGGT
  ATTTTCCTCG TTTATATTTT CAATGCTATC CCAGAGATCC CCCATACCCA CCCACCCCAA
  TCCCCTACCC ACCCACTCCC CCTTTTTGGC CCTGGTGTTC CCCTGTACTG GGGCATATAA
  AGTTTGCAAG TCCAATGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	NZW/LacJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ
ss355315975	MGP_WTSI_2_113891005	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	C	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	NZW/LacJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ
rs259955668					SNP	C	T	C	C	C	C	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315975	MGP_WTSI_2_113891005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113895750 () rs orientation: forward

Symbol	Name	Function Class
Rr562822	regulatory region 562822	995 bp distal