rs259944560 SNP Detail

Summary

• ID
  rs259944560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148716906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA GAATAAACAA AAGATGAATG
  Y
  TAACACAATG AGTAGACCAG AGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320557225	CHEV_2_148700722	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259944560					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148716906 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			546 bp proximal
Rr566977	regulatory region 566977			580 bp proximal
Tssr20682	transcription start site region 20682			162 bp upstream
Tssr20683	transcription start site region 20683			238 bp upstream
Tssr26687	transcription start site region 26687			1916 bp upstream
Tssr26688	transcription start site region 26688			435 bp downstream
Tssr26689	transcription start site region 26689			466 bp downstream
Tssr26690	transcription start site region 26690			618 bp downstream
Tssr26691	transcription start site region 26691			637 bp downstream