rs259936904 SNP Detail

Summary

• ID
  rs259936904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84220319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGAAGAC CCTGATGAGA ATAAAAGCAT
  CACTTAATCT GAGATGACTT TTTAAGTTCT GGAATATTCC CAATAATTTC TTGTTCCATA
  GTATCATAGT GTGTTTTGAT TAACTTATGA AAATCATTTG TAGGAAAGCA TAATATGACA
  R
  AAAATAATCA ATTTATGCTT TAAACATGTT TTCTGTGGAA TAGACCTGTT AAAGAAAATC
  ATGGAGGATT CTGGTTTTGC AAGAGGAAAG GGAATTTCCA GTAAGGAAAT GAATGCAACA
  AGAGTTTTGA AACAGCAAGG GATATTGAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320371283	CHEV_2_84230132	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259936904					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84220319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560247	regulatory region 560247			1583 bp distal
Tssr24972	transcription start site region 24972			268 bp upstream
Tssr24973	transcription start site region 24973			210 bp upstream
Tssr24974	transcription start site region 24974			162 bp upstream
Tssr24975	transcription start site region 24975			821 bp downstream