rs259924550 SNP Detail

Summary

• ID
  rs259924550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152062894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACGGC TCTGTAGCGT
  GGCACACACC GCCCTGCTCT CCTCCTTTTT GTGAGAGCAA AGGAGCAGAA GGCCATGCTT
  AGGAGCAGGG TGCCATGGGG TTCTCGTGAC ACAGGTGAGG GACCATTTGA GCCCACATAT
  GTTCCTAGGC AGATGTGCCC GTTTGTGGGG CAGCACACAG CCCTACACAG CTGAACGGCT
  Y
  CACAAACAAT ACTGGTCCTC TTCAAGAAAA GTAGGAGGTC CAGCTGCTCA CGTCAAGTGT
  CTGTTTTGAG GCAGGATCTC ACAGTGTGTT CTAGATGACA CCATACTTAC TATGTAGCCC
  AGGTTAGCCT TTAAGTTCAT CACTATGTAT CTCTTTACTC CTTTTTTTTT TTTAAGATTT
  ATTTATTTAT TATATGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433797	CHEV_4_151352546	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259924550					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152062894 () rs orientation: forward

Symbol	Name	Function Class
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11	Intron
Rr605686	regulatory region 605686	502 bp distal
Rr605687	regulatory region 605687	222 bp proximal
Rr605688	regulatory region 605688	409 bp proximal
Rr605689	regulatory region 605689	1936 bp proximal