rs259920217 SNP Detail

Summary

• ID
  rs259920217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41523580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGATCAA AACTATGTCA
  ACAAAGGACA TAGTTTTACG TTTCCTAAAG AACACTGGGT CAGACCATTT GTTGTATCTC
  CTTATGAGAA TGGATGAATA TAAATGACAA GCAAAGTGAA AGATTAATGC CACAGAGAAA
  TGGAATGGTG ATTCCAAAGC CAACAGGACC TGCTTGCTTT TTCAGAAACT CTCTCAGCCC
  Y
  GAACCTTTCC AAATACAAAT GATTTGTACC TGATCCAGAC AGTTATCAGC AAAATACTAA
  TTCCACCTCT CTTTACTTTC CAGAGGATCT GAGAAATGTG ACTCCACCCA AGGTCTCCTT
  GTTTGAGCCA TCAAAAGCAG AGATTGCAAA CAAACAAAAG GCTACCCTCG TGTGCTTGGC
  CAGGGGCTTC TTCCCTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368070487	MGP_WTSI_6_41496645	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259920217					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368070487	MGP_WTSI_6_41496645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41523580 () rs orientation: forward

Symbol	Name	Function Class
Gm68268	predicted gene, 68268	within coordinates
Rr629251	regulatory region 629251	1866 bp distal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	84 bp upstream
Tssr1821	transcription start site region 1821	1756 bp downstream
Tssr1822	transcription start site region 1822	874 bp upstream
Tssr55946	transcription start site region 55946	1813 bp downstream
Tssr55947	transcription start site region 55947	1629 bp downstream
Tssr55948	transcription start site region 55948	551 bp downstream
Tssr55949	transcription start site region 55949	340 bp downstream
Tssr55950	transcription start site region 55950	69 bp downstream
Tssr55951	transcription start site region 55951	651 bp upstream
Tssr55952	transcription start site region 55952	698 bp upstream
Tssr55953	transcription start site region 55953	734 bp upstream
Tssr55954	transcription start site region 55954	782 bp upstream
Tssr55955	transcription start site region 55955	807 bp upstream
Tssr55956	transcription start site region 55956	848 bp upstream
Tssr55957	transcription start site region 55957	1136 bp upstream
Tssr60579	transcription start site region 60579	1789 bp upstream