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rs259867006 SNP Detail
Summary
  • ID
    rs259867006
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:117149884 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GAAGC ATTCTGTGAA CTTGTAAACG
Y
GCTCAGGCAA CCATTGGACA ATTTG                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss641191305 FVB_NJ_6_117122941 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C T C T C C C C C T C T C C C C T C T C T C C C C C T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs259867006 SNP C C C C C C C C C C C C C C C C C C C T C C C C C T C T C C C C C T C T C C C C T C T C T C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641191305 FVB_NJ_6_117122941 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:117149884 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl12 C-X-C motif chemokine ligand 12 Intron
Rr637288 regulatory region 637288 255 bp distal
Rr637289 regulatory region 637289 943 bp proximal
Rr637290 regulatory region 637290 1128 bp proximal
Rr637291 regulatory region 637291 1179 bp proximal
Tssr58392 transcription start site region 58392 1436 bp downstream
Tssr58393 transcription start site region 58393 1417 bp downstream
Tssr58394 transcription start site region 58394 1377 bp downstream
Tssr58395 transcription start site region 58395 569 bp upstream
Tssr58396 transcription start site region 58396 585 bp upstream
Tssr58397 transcription start site region 58397 623 bp upstream
Tssr58398 transcription start site region 58398 649 bp upstream
Tssr58399 transcription start site region 58399 671 bp upstream
Tssr58400 transcription start site region 58400 699 bp upstream
Tssr58401 transcription start site region 58401 735 bp upstream
Tssr58402 transcription start site region 58402 766 bp upstream
Tssr58403 transcription start site region 58403 784 bp upstream
Tssr58404 transcription start site region 58404 803 bp upstream
Tssr58405 transcription start site region 58405 845 bp upstream
Tssr58406 transcription start site region 58406 875 bp upstream
Tssr58407 transcription start site region 58407 906 bp upstream
Tssr58408 transcription start site region 58408 973 bp upstream
Tssr58409 transcription start site region 58409 995 bp upstream
Tssr58410 transcription start site region 58410 1017 bp upstream
Tssr58411 transcription start site region 58411 1033 bp upstream
Tssr58412 transcription start site region 58412 1060 bp upstream
Tssr58413 transcription start site region 58413 1073 bp upstream
Tssr58414 transcription start site region 58414 1106 bp upstream
Tssr58415 transcription start site region 58415 1121 bp upstream
Tssr58416 transcription start site region 58416 1136 bp upstream
Tssr58417 transcription start site region 58417 1190 bp upstream
Tssr58418 transcription start site region 58418 1223 bp upstream
Tssr58419 transcription start site region 58419 1242 bp upstream
Tssr58420 transcription start site region 58420 1269 bp upstream
Tssr58421 transcription start site region 58421 1288 bp upstream
Tssr58422 transcription start site region 58422 1314 bp upstream
Tssr58423 transcription start site region 58423 1322 bp upstream
Tssr58424 transcription start site region 58424 1384 bp upstream
Tssr58425 transcription start site region 58425 1429 bp upstream
Tssr58426 transcription start site region 58426 1451 bp upstream
Tssr58427 transcription start site region 58427 1478 bp upstream
Tssr58428 transcription start site region 58428 1493 bp upstream
Tssr58429 transcription start site region 58429 1558 bp upstream
Tssr58430 transcription start site region 58430 1603 bp upstream
Tssr58431 transcription start site region 58431 1699 bp upstream
Tssr58432 transcription start site region 58432 1772 bp upstream
Tssr58433 transcription start site region 58433 1808 bp upstream
Tssr62617 transcription start site region 62617 633 bp downstream
Tssr62618 transcription start site region 62618 655 bp downstream
Tssr62619 transcription start site region 62619 691 bp downstream
Tssr62620 transcription start site region 62620 734 bp downstream
Tssr62621 transcription start site region 62621 800 bp downstream
Tssr62622 transcription start site region 62622 1352 bp downstream
Tssr62623 transcription start site region 62623 1370 bp downstream
Tssr62624 transcription start site region 62624 1485 bp downstream
Tssr62625 transcription start site region 62625 1636 bp downstream
Tssr62626 transcription start site region 62626 1732 bp downstream
Tssr62627 transcription start site region 62627 1763 bp downstream
Tssr62628 transcription start site region 62628 1898 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory