rs259857780 SNP Detail

Summary

• ID
  rs259857780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:96532183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGACCT ACTAACAATT
  GATAAGCAAA CAATAACAAC AAAAGAATGT GAAAATGGAC AGATGTAGAA AGGAGATAGA
  GATGGAAGGA GCTGGGGAAA GGGGTGAATA TGATGAAAGT GCATTCTAAG AAAGACTCAG
  AGAACTAATG ATGAATGTAA ACAAAAACAT AAAGGCATAA AATTCAAATA CAAAAGAATA
  K
  AAAAATAGGC AGAAATCCAA GAAAGAGAAT TATTTATATT CACAAGAAAT AAATTGCTCC
  TTAGGAAAGA AACTTTTACT AGAACTTAGG ACCACTAAGA AAAAATACAT TTATATGTGT
  CTAATATTTT ATTAGGTATT TATTTCATTT ACATTTCCAG TGCTATTCCA AAAGTCCCCC
  ACATGCTCCC CCACGCACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321216748	CHEV_4_96310637	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259857780					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96532183 () rs orientation: forward

Symbol	Name	Function Class
Cyp2j5	cytochrome P450, family 2, subfamily j, polypeptide 5	Intron
Tssr42487	transcription start site region 42487	1214 bp upstream