rs259825192 SNP Detail

Summary

• ID
  rs259825192
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167029647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGCCAA GTGCAAACTG
  CACCACACAG CAAGTACATA AACAAGGAGC CAGCCTGGTC CTCTCACCCG CTGTCCCGAG
  CCTTGGGGCA GACCTGTCCT TACCACTAGC CTTCCCTGTC TTTTGTCATC TCTTAAAATA
  CCTGTGGGTG CCTCAGCCTC TGCCAGGCGT GTCGGTAGGC TGTGTTTATA CCCTTCCTTA
  W
  GAGCAGAGTG GGGTTATAAT TCAGGGCTAG ATGTTACATC TGCAGGGCAG GCTATTCTAG
  TATGTATCCA GGCCTGGAGG CACCAAGACT ATCCAGCAAA GCTCGACTCT GTTCTCACCA
  AGGCCGTAGC ATTTTAGAGT TTTATAAACC ATTTCCCCCC AACAAAGTAG GGGTACACCG
  TACTGAATCA CATGGGAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356500157	MGP_WTSI_2_167013227	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259825192					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356500157	MGP_WTSI_2_167013227	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167029647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1110018N20Rik	RIKEN cDNA 1110018N20 gene			1022 bp upstream
Cpgi12734	CpG island 12734			309 bp proximal
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1			Intron
				Noncoding-Transcript-Variant
Rr570485	regulatory region 570485			467 bp proximal
Rr570486	regulatory region 570486			485 bp proximal
Rr570487	regulatory region 570487			1081 bp proximal
Rr570488	regulatory region 570488			1909 bp proximal
Tssr21792	transcription start site region 21792			1933 bp upstream
Tssr21793	transcription start site region 21793			1952 bp upstream
Tssr27748	transcription start site region 27748			897 bp downstream
Tssr27749	transcription start site region 27749			1044 bp downstream
Tssr27750	transcription start site region 27750			1060 bp downstream
Tssr27751	transcription start site region 27751			1102 bp downstream