rs259817760 SNP Detail

Summary

• ID
  rs259817760
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105709465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACCCGG TGGAGCCTTT
  GGGCCATTGT AATGACAACA GGAAGCCCCG AGGAGAGGGT GGGCCCAGAA ACAACTATAT
  CTAGTTCATG TTTTTAAAGG TTAACTTTAT GCAGGGCGTG GTGGTTTACT CCTGGAATCC
  CAGCATTTTG AAAACAGGAA CAGAATTGCC ACGAGTTTGA GGTTAGCCTG GACTACACAA
  K
  GAGTTTCAGG CCCATCGGGA ACTGGAGTGA GTCTCACTGT GTATGTAAAA TATCCAACTG
  AAGCACGAAT GTTCACAGGG GAAGTCTAAG GTGGCTATTC TCGTCCAATT GGCCAAGAGT
  GGTTATTTTA TTTTAGATTT TGTTTATTTT AGCTTTATTA AACCTATTTT AATAGATTTA
  GACTTGAGAA AGCAGAGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359118184	MGP_WTSI_3_105605067	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259817760					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359118184	MGP_WTSI_3_105605067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105709465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13662	CpG island 13662	347 bp distal
Rap1a	RAS-related protein 1a	813 bp upstream
Rr582781	regulatory region 582781	1301 bp distal
Rr582782	regulatory region 582782	875 bp distal
Rr582783	regulatory region 582783	323 bp distal
Rr582784	regulatory region 582784	1450 bp proximal
Tssr31081	transcription start site region 31081	1442 bp upstream
Tssr31082	transcription start site region 31082	1473 bp upstream
Tssr31083	transcription start site region 31083	1771 bp upstream
Tssr34930	transcription start site region 34930	1462 bp upstream
Tssr34931	transcription start site region 34931	834 bp upstream
Tssr34932	transcription start site region 34932	772 bp upstream