rs259806677 SNP Detail

Summary

• ID
  rs259806677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165839284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATTTA TTTATTTATT
  TTATGTATGT GAGTACACTG TAGCTGTCTT CACACACCAG AAGAAGGCTT CAGATCCCAT
  TACAGATAGT TGTGAGCCAC CATGTGGTTG CTGGGAATTG AATTCGGGAC CTCTGGAGGA
  GCAGTCAGTG CTCTTCACCA CTGAGCCATG TCTCCAGCCC CCACTAATGC CCTTTAAAAA
  R
  AATATTTGTT TTTTTTTTTT TTTTTTTTAA TTTATTTTAT GTATGAGTGC TCTGCTACAT
  GTACACTTGC ATGCCAGAAG AGGGCGTCAG TTCCCTTTAT AGATGGCCGT GAGCTGCCGT
  GTGGGTGCTG GGACTGGAAC TCAGGACCTG GAAGAGCAGC CATGCTCTTA ACCGATGTGC
  CATCTCTCTA GCCCCATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss356470221	MGP_WTSI_2_165822864	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs259806677					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356470221	MGP_WTSI_2_165822864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165839284 () rs orientation: forward

Symbol	Name	Function Class
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570101	regulatory region 570101	883 bp distal
Rr570102	regulatory region 570102	70 bp proximal
Tssr21752	transcription start site region 21752	24 bp upstream