rs259792890 SNP Detail

Summary

• ID
  rs259792890
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagttcgga gatgattgtg agccactgtg
  tggatgctgg gaacaaaacc tgggtccttt ccaagagtgt ccagggcgct taatccctgt
  gccatctctc catcctctag tcttagtcct taaccctctc tcagccttct gagtggtagg
  C
  atttctggcc tgTGATCAGG TGCTGGGACA CTCCAAGGGA ACCCCTCTTT TCTGAGAGTG
  AGATGGAGCC ATCTTAGCCT TAACTTCTgg gaggcgatgg tgaggacggg aggcaagggc
  ttagaggtct gtgagcagac ctccatttgc                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334507	CHEV_4_132120907	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259792890					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292303 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	915 bp distal
Rr601016	regulatory region 601016	695 bp distal
Rr601017	regulatory region 601017	867 bp distal
Rr601018	regulatory region 601018	712 bp distal
Rr601019	regulatory region 601019	499 bp proximal
Tssr39381	transcription start site region 39381	1511 bp downstream
Tssr39382	transcription start site region 39382	1482 bp downstream
Tssr39383	transcription start site region 39383	1399 bp downstream
Tssr39384	transcription start site region 39384	1364 bp downstream
Tssr39385	transcription start site region 39385	1255 bp downstream
Tssr39386	transcription start site region 39386	916 bp downstream
Tssr39387	transcription start site region 39387	899 bp downstream
Tssr39388	transcription start site region 39388	782 bp downstream
Tssr39389	transcription start site region 39389	368 bp upstream