rs259769409 SNP Detail

Summary

• ID
  rs259769409
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116761778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC CGATAGAAGG AATTTGAAGA
  G
  AAAACCCTAA ACTTCAGATA TCCAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320897081	CHEV_3_116671047	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259769409					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116761778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			138 bp upstream
Gm52613	predicted gene, 52613			116 bp downstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			1494 bp distal
Rr583815	regulatory region 583815			925 bp distal
Rr583816	regulatory region 583816			1322 bp distal
Rr583817	regulatory region 583817			48 bp proximal
Rr583818	regulatory region 583818			719 bp proximal
Tssr35360	transcription start site region 35360			409 bp downstream
Tssr35361	transcription start site region 35361			434 bp downstream
Tssr35362	transcription start site region 35362			499 bp downstream
Tssr35363	transcription start site region 35363			547 bp downstream
Tssr35364	transcription start site region 35364			583 bp downstream
Tssr35365	transcription start site region 35365			643 bp downstream
Tssr35366	transcription start site region 35366			661 bp downstream
Tssr35367	transcription start site region 35367			698 bp downstream
Tssr35368	transcription start site region 35368			799 bp downstream
Tssr35369	transcription start site region 35369			840 bp downstream
Tssr35370	transcription start site region 35370			883 bp downstream
Tssr35371	transcription start site region 35371			1385 bp downstream