rs259714769 SNP Detail

Summary

• ID
  rs259714769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32563060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGAAA ACAATGATGC
  ATGCTGTCTA AATACCATGA CATAGTCTCT CCCCCCTCCC CTTCTAGTGA CGCAGGCAAG
  AGGAGAATTA AGTCAAACTC AAGGGCAAGC CTGAGAAACC CTATAACTGA CAGTGATCGC
  ATGGCTCCCC CTTGTGTCCT CTACTAGATT CACAGCGAGA AACCCGTAGC CGCCGGCAGC
  R
  TCTTTATAAA TTCAACAGTC TTCAATCAAT CAGGCCCCAA TTCCCTATTT TGTACCCGAT
  GCTAAGTATA CTAGGAATAA AGAAGGTCTG CGAACCCTCT CTTACTCCTT TTGGGTTACA
  CTGGTGTGCC TGAATATTCA TGTCTAAGAG GAGAATGCCT ACAGATTATG AGGTCACCAA
  ACTGAATCTC ACAAAAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357466532	MGP_WTSI_3_32407833	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259714769					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357466532	MGP_WTSI_3_32407833	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32563060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13057	CpG island 13057	1312 bp proximal
Rr397635	regulatory region 397635	1426 bp upstream
Rr574974	regulatory region 574974	143 bp distal
Rr574975	regulatory region 574975	39 bp distal
Rr574976	regulatory region 574976	858 bp proximal
Rr574977	regulatory region 574977	895 bp proximal
Rr574978	regulatory region 574978	1635 bp proximal
Tssr28753	transcription start site region 28753	1627 bp upstream
Tssr28754	transcription start site region 28754	1654 bp upstream
Tssr28755	transcription start site region 28755	1779 bp upstream
Zfp639	zinc finger protein 639	1348 bp upstream