rs259709900 SNP Detail

Summary

• ID
  rs259709900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57481640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA CTACTGCCCT GCCGTGACGG
  Y
  ATTTTAGGTT ACCAAGTGTA ACATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320781040	CHEV_3_57378141	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259709900					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57481640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13196	CpG island 13196	447 bp proximal
D3Mit172	DNA segment, Chr 3, Massachusetts Institute of Technology 172	424 bp proximal
Gm65379	predicted gene, 65379	1844 bp downstream
Rr577124	regulatory region 577124	1367 bp distal
Rr577125	regulatory region 577125	1599 bp proximal
Tssr33328	transcription start site region 33328	1541 bp downstream
Tssr33329	transcription start site region 33329	1625 bp downstream
Tssr33330	transcription start site region 33330	1636 bp downstream
Tssr33331	transcription start site region 33331	1688 bp downstream
Wwtr1	WW domain containing transcription regulator 1	Intron