rs259706053 SNP Detail

Summary

• ID
  rs259706053
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148695227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCGCGCG CGCGTGTGTG
  TGTGTGTGTG TGCAAGTGTG TGTGCCTGTG AGTGCGAGTG TGTGTGAGCG TGTGTGAGCC
  GGGAGAGAGT GAGAGCTAGA GAAGAGCAGG GAGAGCAGGG AGCGAGAGGC GGGGAGCCCG
  AAGTCCTGAC ACGGACTCAG CTAGGGCTGA ACTGGAGTCA CCTCCTGCCT CCTCCTCCTC
  S
  TCGTCGTCGT CAGTCCCCAC CCCCAGCCCC CTCAGCCCAG GACTGCTAAT CATATAAACA
  TATGAGCGCG GACCGCGGCG CAGCATCCGT CTCTCCCTCC CTCGTTTGCC AGCCAAGAGG
  CTTGTGCAAA CTCCAAAGAA GAGAGGCAGC TGAGTACAAA ACGCGGAGCA GATAATCTAG
  AACTCATTGC GCCCAATGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360182871	MGP_WTSI_3_148652555	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259706053					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360182871	MGP_WTSI_3_148652555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148695227 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Cpgi13930	CpG island 13930	within coordinates
Gm43573	predicted gene 43573	within coordinates
Rr587240	regulatory region 587240	1947 bp distal
Rr587241	regulatory region 587241	275 bp distal
Rr587242	regulatory region 587242	within coordinates
Rr587243	regulatory region 587243	954 bp proximal
Tssr36077	transcription start site region 36077	494 bp upstream
Tssr36078	transcription start site region 36078	484 bp upstream
Tssr36079	transcription start site region 36079	240 bp upstream
Tssr36080	transcription start site region 36080	202 bp upstream
Tssr36081	transcription start site region 36081	179 bp upstream
Tssr36082	transcription start site region 36082	95 bp upstream
Tssr36083	transcription start site region 36083	69 bp upstream
Tssr36084	transcription start site region 36084	38 bp upstream
Tssr36085	transcription start site region 36085	21 bp upstream
Tssr36086	transcription start site region 36086	121 bp downstream
Tssr36087	transcription start site region 36087	395 bp downstream
Tssr36088	transcription start site region 36088	509 bp downstream
Tssr36089	transcription start site region 36089	928 bp downstream
Tssr36090	transcription start site region 36090	978 bp downstream