rs259675807 SNP Detail

Summary

• ID
  rs259675807
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108866992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTTTT ACACGGATCA
  CCATGCAATA TCAAGTAAAA ACACTGGGTT ATGGGTTCGA TCTAGCCCAC AACCATCTGT
  TTAACTCTAG TCTCTCCAGA TCCAGTGAGC TCTTCTGGCC TCAGTGGGTG CCAGACATGC
  ATATGGTGCA CAGACATACA CACAGGCAAA AGACTTACAC ACAAAATAAT AATTTTTTTT
  W
  AAAAATTAAA GTTAGTGCCT ACTGGTAGAA ACCTGACTGG GAAATCGTTG GCATTAGAAT
  TAGAAGCAAA CCAGCTAGCT AGTGCCTGCA TGTATTTTGC TCCCAGTAAA ATCAAGGCTT
  TTTACAATGA GTAGGCTCTG ACACATACGC AGGAGGCACT CATGGTTCCT GTGGGGCTGA
  ATTGCTGATG ATTTAAAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320867103	CHEV_3_108762594	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259675807					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108866992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)			Intron
				Noncoding-Transcript-Variant
Rr583357	regulatory region 583357			1372 bp proximal