rs259671163 SNP Detail

Summary

• ID
  rs259671163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82936779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACATATT TAGTAGTTGG
  ACTTTCTAAC AAGTATGGTA ACAAAAGTCC CAAATGATGT CTTCTTGGAG ATACTGTGGT
  TTTACTTCAA ATCACTCAGT GTGGAAATCA CTGAAACTTA AGGAGATGGA TGTCATTTTC
  ACAAAGTTAG AAGTTTTTAA ATAAAGAGAG GGGAACCTTT CAACTAGCTG TTCAGCTTCT
  R
  TCCTACAGAC AGAGTCTCAG AGGTCAAGGG ACTTCTCAGT GACACAAAAT AGAGGTCAGC
  TCAACATTGC ACTGAGTCGA TCATGTCTTC CCCATGGGAC TCACGAGGGC TCAGGCACAC
  TGTGGTCGAT CTGGGGATGC AGAGCAAGTC TATTGAAGTC CCAGCTCTTG AGCTCTTGTT
  TGCCTTATTC TGTATTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676665	MGP_WTSI_3_82833394	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259671163					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676665	MGP_WTSI_3_82833394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82936779 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr29661	transcription start site region 29661	924 bp downstream
Tssr29662	transcription start site region 29662	875 bp downstream
Tssr29663	transcription start site region 29663	858 bp downstream
Tssr29664	transcription start site region 29664	375 bp downstream
Tssr29665	transcription start site region 29665	336 bp downstream
Tssr29666	transcription start site region 29666	300 bp downstream
Tssr29667	transcription start site region 29667	257 bp downstream
Tssr29668	transcription start site region 29668	726 bp upstream
Tssr29669	transcription start site region 29669	770 bp upstream
Tssr29670	transcription start site region 29670	814 bp upstream
Tssr29671	transcription start site region 29671	1358 bp upstream
Tssr29672	transcription start site region 29672	1461 bp upstream
Tssr29673	transcription start site region 29673	1489 bp upstream
Tssr29674	transcription start site region 29674	1538 bp upstream
Tssr29675	transcription start site region 29675	1548 bp upstream
Tssr29676	transcription start site region 29676	1558 bp upstream
Tssr29677	transcription start site region 29677	1575 bp upstream
Tssr29678	transcription start site region 29678	1654 bp upstream
Tssr29679	transcription start site region 29679	1698 bp upstream
Tssr29680	transcription start site region 29680	1721 bp upstream
Tssr29681	transcription start site region 29681	1823 bp upstream
Tssr29682	transcription start site region 29682	1846 bp upstream
Tssr29683	transcription start site region 29683	1889 bp upstream
Tssr29684	transcription start site region 29684	1914 bp upstream
Tssr29685	transcription start site region 29685	1955 bp upstream
Tssr33800	transcription start site region 33800	1630 bp downstream
Tssr33801	transcription start site region 33801	1975 bp downstream