rs259664672 SNP Detail

Summary

• ID
  rs259664672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102028330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATAAAC AGTATGCTGG
  AGGCCATCCT CGGCTACATA GGGAGTTCAA GGCCAGCCTG GACACTTGAG ACCCTGGTGA
  AAAGAAAAGA ACTAATCTAA TAGAATCAGC CCAGGTGTTC ATAAACAGAG ATGCAGTTAA
  AGGAAATGTG GGGCTTGAGA GGTGGCCCAG CAGTTAAAAG CATTGACTGA TTTGCCAAAG
  R
  ACCCAGGTTC AAGTCCTAGC ACCCATAAAG TGGATCATAA TTATTTGTAA CTCCAGTTCC
  AGGAGCTTTG ATGCCCTCTT CTGGCCTCTC CAGGAACCAC ACTCAGAAGT GCTGTACAGA
  CCATCTGTAC ACATGTGATG GTGTGTATAT GCTCTGCCCA GGGAGTGGCA CTATTAGAAG
  GTGTGGCCCT GTTGGAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854491	CHEV_3_101924937	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259664672					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102028330 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	63 bp proximal
Rr582182	regulatory region 582182	68 bp proximal
Rr582183	regulatory region 582183	1147 bp proximal
Rr582184	regulatory region 582184	1165 bp proximal
Rr582185	regulatory region 582185	1230 bp proximal