rs259652275 SNP Detail

Summary

• ID
  rs259652275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153568085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTGTAC AAGCCTGCTG
  GCCTGAGCTT GATCCTCAGG GAAAGAGAGA ACAGACTACA AAATTGTTCT CTGACCTCCA
  AACACTGTGG GATGTACGTC CATACACATT AAATATACAT GCACACATTA GCAGTAAATA
  CATTTTTAAA GAAGAGTTAG GGTGGCATTG GAAGATGTAT GTCCATGCAC ATTAATCATA
  Y
  GTTTACACAT TAGCAGTAAA TACATCTTAA AAAAAGAATC AGGGCCGGCT TTGGACAGCT
  GGAAGTTCAA GGGAGATGCT TGGCATGAAT CCTCAGCCCC CCGTGGCACT TGTTCTTCCT
  TTGTTTTGAC TTTGAAGTGG ACCCTTGGCC TAACCACACA GACTTGTGTG TTTTCATCCT
  GTGTTTGAGC ATTGCTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320564636	CHEV_2_153551901	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259652275					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153568085 () rs orientation: forward

Symbol	Name	Function Class
Dnmt3c	DNA methyltransferase 3C	Intron
Gm74761	predicted gene, 74761	within coordinates
Rr567733	regulatory region 567733	1337 bp distal