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rs259603077 SNP Detail
Summary
  • ID
    rs259603077
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:89264287 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCAGCCTT GAAACCAGGA
    GAAATGCATT TCTTTTTCTA TACATAGCTC TTCCTGCACC AGCAGAGAGA ACACACGCCC
    CTTCATGCAG TCTTCATTCA CACTTTACTA CCTACACTTT CACTGTCTAA GGGGCAGGTC
    ATGAGAGACA CCCACAGACG TTAAACATTC TGGCTGTTAC ATGTGTGTGT GTGTGTGTGT
    R
    TGTGCATGTG CACGTGCACA TGAGACGAAG TCAAAGGTCA GTCTTGGGTG TTGTCCCTCA
    GGTGCCATCT ACCTTGTTTT GTGAGACTGG GTTTCTCATT GGCCGGGAGC TCTCCAAGCC
    CAGAGCAGAT TACAAACACA TGCTACCATT TCCAGCTTTT TCTTTTTTTT AAGCGTGGGT
    TCGGTTCTGC AGGTTGAGCT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369147141 MGP_WTSI_6_89237299 EVA_MGPV3 EVA_MGPV3 f SNP A A G A A A A G A A A A A A A A G A G G A A A A A A A G A A A A A G A A G A G A A A G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259603077 SNP A A G A A A A G A A A A A A A A G A G G A A A A A A A G A A A A A G A A G A G A A A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss369147141 MGP_WTSI_6_89237299 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89264287 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930512J16Rik RIKEN cDNA 4930512J16 gene 1580 bp upstream
Rr379731 regulatory region 379731 1286 bp downstream
Rr379732 regulatory region 379732 184 bp upstream
Rr634092 regulatory region 634092 1195 bp distal
Rr634093 regulatory region 634093 1094 bp distal
Rr634094 regulatory region 634094 483 bp distal
Rr634095 regulatory region 634095 20 bp distal
Rr634096 regulatory region 634096 761 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory