rs259603077 SNP Detail

Summary

• ID
  rs259603077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89264287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCCTT GAAACCAGGA
  GAAATGCATT TCTTTTTCTA TACATAGCTC TTCCTGCACC AGCAGAGAGA ACACACGCCC
  CTTCATGCAG TCTTCATTCA CACTTTACTA CCTACACTTT CACTGTCTAA GGGGCAGGTC
  ATGAGAGACA CCCACAGACG TTAAACATTC TGGCTGTTAC ATGTGTGTGT GTGTGTGTGT
  R
  TGTGCATGTG CACGTGCACA TGAGACGAAG TCAAAGGTCA GTCTTGGGTG TTGTCCCTCA
  GGTGCCATCT ACCTTGTTTT GTGAGACTGG GTTTCTCATT GGCCGGGAGC TCTCCAAGCC
  CAGAGCAGAT TACAAACACA TGCTACCATT TCCAGCTTTT TCTTTTTTTT AAGCGTGGGT
  TCGGTTCTGC AGGTTGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369147141	MGP_WTSI_6_89237299	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	G	A	G	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259603077					SNP	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	G	A	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369147141	MGP_WTSI_6_89237299	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89264287 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	1580 bp upstream
Rr379731	regulatory region 379731	1286 bp downstream
Rr379732	regulatory region 379732	184 bp upstream
Rr634092	regulatory region 634092	1195 bp distal
Rr634093	regulatory region 634093	1094 bp distal
Rr634094	regulatory region 634094	483 bp distal
Rr634095	regulatory region 634095	20 bp distal
Rr634096	regulatory region 634096	761 bp proximal