CAGAGCCGAG ACTAGGCAGG
TGTGGAATTA GAAAATGTAT ACCCCACTTT TAAGAGCAAC TAAGAAATCA ACTTTTTATT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTACCC TTGGAGGTCA GAGTTCTAGA
GGGAATTGGC TCTCTCCTTC CACTATGTTG GTCTCAGAGT TAAGTCTTCA AGCTTTATGA
Y
AAGCACCTTT ACCCACTAAG CCATCAATCC TCTTATAGTT AGGGGAAATC AAGGCCTAAA
GAGTATATAA AACAGCTGCT CAGGGCTATT GAATCTCAGA GAGGTCTCAG AACCGCCTCA
GCCTCAACCC ACCAGCAGAA GAGATCTAGG GCTAGAATAG AGTCCACAGA GGAGCAGAAA
AAGCGGCACC ACAGCAAGTC
Y = C/T
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss370754814 | MGP_WTSI_7_20283324 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
| SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
| rs259592488 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | ||||
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
|---|---|---|---|---|---|---|
| ss370754814 | MGP_WTSI_7_20283324 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
| Location: Chr7:19431900 () rs orientation: forward | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Apoe | apolipoprotein E | Intron | ||||||
| Noncoding-Transcript-Variant | ||||||||
| Gm71725 | predicted gene, 71725 | within coordinates | ||||||
| Rr643240 | regulatory region 643240 | 1503 bp distal | ||||||
| Rr643241 | regulatory region 643241 | 839 bp distal | ||||||
| Rr643242 | regulatory region 643242 | 282 bp proximal | ||||||
| Rr643243 | regulatory region 643243 | 300 bp proximal | ||||||
| Rr643244 | regulatory region 643244 | 1023 bp proximal | ||||||
| Tssr2112 | transcription start site region 2112 | 1514 bp downstream | ||||||
| Tssr2113 | transcription start site region 2113 | 1484 bp downstream | ||||||
| Tssr2114 | transcription start site region 2114 | 1358 bp downstream | ||||||
| Tssr2115 | transcription start site region 2115 | 1330 bp downstream | ||||||
| Tssr2116 | transcription start site region 2116 | 1260 bp downstream | ||||||
| Tssr2117 | transcription start site region 2117 | 1206 bp downstream | ||||||
| Tssr2118 | transcription start site region 2118 | 1111 bp downstream | ||||||
| Tssr2119 | transcription start site region 2119 | 1134 bp upstream | ||||||
| Tssr2120 | transcription start site region 2120 | 1061 bp downstream | ||||||
| Tssr2121 | transcription start site region 2121 | 1035 bp downstream | ||||||
| Tssr2122 | transcription start site region 2122 | 310 bp upstream | ||||||
| Tssr64880 | transcription start site region 64880 | 1701 bp downstream | ||||||
| Tssr64881 | transcription start site region 64881 | 1638 bp downstream | ||||||
| Tssr64882 | transcription start site region 64882 | 1579 bp downstream | ||||||
| Tssr64883 | transcription start site region 64883 | 1562 bp downstream | ||||||
| Tssr64884 | transcription start site region 64884 | 1534 bp downstream | ||||||
| Tssr64885 | transcription start site region 64885 | 1456 bp downstream | ||||||
| Tssr64886 | transcription start site region 64886 | 1421 bp downstream | ||||||
| Tssr64887 | transcription start site region 64887 | 1403 bp downstream | ||||||
| Tssr64888 | transcription start site region 64888 | 1185 bp downstream | ||||||
| Tssr64889 | transcription start site region 64889 | 1078 bp downstream | ||||||
| Tssr64890 | transcription start site region 64890 | 1044 bp downstream | ||||||
| Tssr64891 | transcription start site region 64891 | 1016 bp downstream | ||||||
| Tssr64892 | transcription start site region 64892 | 985 bp downstream | ||||||
| Tssr64893 | transcription start site region 64893 | 891 bp downstream | ||||||
| Tssr64894 | transcription start site region 64894 | 477 bp downstream | ||||||
| Tssr64895 | transcription start site region 64895 | 398 bp downstream | ||||||
| Tssr64896 | transcription start site region 64896 | 374 bp downstream | ||||||
| Tssr70973 | transcription start site region 70973 | 1646 bp upstream | ||||||
| Tssr70974 | transcription start site region 70974 | 1613 bp upstream | ||||||
| Tssr70975 | transcription start site region 70975 | 1588 bp upstream | ||||||
| Tssr70976 | transcription start site region 70976 | 1536 bp upstream | ||||||
| Tssr70977 | transcription start site region 70977 | 1515 bp upstream | ||||||
| Tssr70978 | transcription start site region 70978 | 1492 bp upstream | ||||||
| Tssr70979 | transcription start site region 70979 | 1484 bp upstream | ||||||
| Tssr70980 | transcription start site region 70980 | 1470 bp upstream | ||||||
| Tssr70981 | transcription start site region 70981 | 1446 bp upstream | ||||||
| Tssr70982 | transcription start site region 70982 | 1417 bp upstream | ||||||
| Tssr70983 | transcription start site region 70983 | 1396 bp upstream | ||||||
| Tssr70984 | transcription start site region 70984 | 1336 bp upstream | ||||||
| Tssr70985 | transcription start site region 70985 | 1301 bp upstream | ||||||
| Tssr70986 | transcription start site region 70986 | 1272 bp upstream | ||||||
| Tssr70987 | transcription start site region 70987 | 1227 bp upstream | ||||||
| Tssr70988 | transcription start site region 70988 | 1208 bp upstream | ||||||
| Tssr70989 | transcription start site region 70989 | 1170 bp upstream | ||||||
| Tssr70990 | transcription start site region 70990 | 1151 bp upstream | ||||||
| Tssr70991 | transcription start site region 70991 | 1121 bp upstream | ||||||
| Tssr70992 | transcription start site region 70992 | 1109 bp upstream | ||||||
| Tssr70993 | transcription start site region 70993 | 1080 bp upstream | ||||||
| Tssr70994 | transcription start site region 70994 | 1065 bp upstream | ||||||
| Tssr70995 | transcription start site region 70995 | 1032 bp upstream | ||||||
| Tssr70996 | transcription start site region 70996 | 1006 bp upstream | ||||||
| Tssr70997 | transcription start site region 70997 | 940 bp upstream | ||||||
| Tssr70998 | transcription start site region 70998 | 920 bp upstream | ||||||
| Tssr70999 | transcription start site region 70999 | 864 bp upstream | ||||||
| Tssr71000 | transcription start site region 71000 | 453 bp upstream | ||||||
| Tssr71001 | transcription start site region 71001 | 387 bp upstream | ||||||
| Tssr71002 | transcription start site region 71002 | 368 bp upstream | ||||||
| Tssr71003 | transcription start site region 71003 | 340 bp upstream | ||||||
| Tssr71004 | transcription start site region 71004 | 322 bp upstream | ||||||
| Tssr71005 | transcription start site region 71005 | 16 bp downstream | ||||||
| Tssr71006 | transcription start site region 71006 | 49 bp downstream | ||||||
| Tssr71007 | transcription start site region 71007 | 107 bp downstream | ||||||
| Tssr71008 | transcription start site region 71008 | 213 bp downstream | ||||||
| Tssr71009 | transcription start site region 71009 | 231 bp downstream | ||||||
| Tssr71010 | transcription start site region 71010 | 375 bp downstream | ||||||
| Tssr71011 | transcription start site region 71011 | 408 bp downstream | ||||||
| Tssr71012 | transcription start site region 71012 | 444 bp downstream | ||||||
| Tssr71013 | transcription start site region 71013 | 1070 bp downstream | ||||||
| Tssr71014 | transcription start site region 71014 | 1619 bp downstream | ||||||
| Tssr71015 | transcription start site region 71015 | 1744 bp downstream | ||||||
| Tssr71016 | transcription start site region 71016 | 1980 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 01/20/2026 MGI 6.24 |
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