rs259592461 SNP Detail

Summary

• ID
  rs259592461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21984480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCTAAA GGCAATTCTA
  GTTAGCATCC AATTTACTCT TCTGTAATCT GACTCAGTGA CTTAATAATT CCTCCCTCCA
  AAAAAAGGAT TCTTCCTTCC TCAAAACTTG ATTTTTTTTT CATAATTCTA GGGTTAATAA
  TTAACAACTA CCTATACTGC TCATAACACC CAGTAAACAG CTTTACCATA CTCTGGGTCT
  Y
  ATTAACATAG AAACCATTCC AGTTTAGAGG TCTAGTAATT CCTATTGGCC TTCAAAATAT
  ATTACATCCA CACAAAACCT GTGGCATGCA GCAGTGATGC TCTTTCAATG TCTATATGTG
  AAAACCAGGT TAATTTTCTC CCATTCCCTT ATTTGTCATG GTATTGAAGA CTGAATTTAT
  ATATTAAATA GTAGTAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367640463	MGP_WTSI_6_21934481	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259592461					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367640463	MGP_WTSI_6_21934481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21984480 () rs orientation: forward

Symbol	Name	Function Class
Cped1	cadherin-like and PC-esterase domain containing 1	1435 bp upstream
Cpgi17190	CpG island 17190	1286 bp proximal
Rr627034	regulatory region 627034	599 bp proximal
Rr627035	regulatory region 627035	945 bp proximal
Rr627036	regulatory region 627036	1625 bp proximal
Tssr1788	transcription start site region 1788	1772 bp upstream
Tssr55139	transcription start site region 55139	1422 bp upstream
Tssr55140	transcription start site region 55140	1497 bp upstream
Tssr55141	transcription start site region 55141	1650 bp upstream
Tssr55142	transcription start site region 55142	1674 bp upstream
Tssr55143	transcription start site region 55143	1700 bp upstream
Tssr55144	transcription start site region 55144	1870 bp upstream
Tssr55145	transcription start site region 55145	1897 bp upstream
Tssr55146	transcription start site region 55146	1957 bp upstream