rs259588043 SNP Detail

Summary

• ID
  rs259588043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109765265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCAGGC TGCACATAGC
  CCTTCCTTCA ATCACAGCTA TGGAGGCAGA GGCCAGCAGA TGGGTCCCTG TGAGTTCCAG
  GCCAGCCAGG GCTACATAAT AAGACTCTCA AGGAAAAAAA AAAAAATCTC AAATCAATGT
  TGGGCTAGGA ATGTATGACC ATAACACATA ACCCAGGTGT AGTGGCTCAT GTCTATAGTG
  R
  AGAGATAGAT ACAGGAGGAT CCAAAATTCA AGGTCTTCTT TGGTTATACA GTTACTTTGA
  GACCTTGCTT CTTACATATA AATAGTAAAT GAAAGGAAAT AAAATCAATG TTATAAATTC
  AGGACTCTGC AGAAAAGGAC CCCCTGCCCT GAGACCTGGA GTGTTGCCTG GCCTCTACAG
  GAGGAGTCAT GCAAAGTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372700309	MGP_WTSI_7_117309572	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	A	G	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259588043					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	A	G	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372700309	MGP_WTSI_7_117309572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109765265 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	1123 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	1648 bp distal
Rr653201	regulatory region 653201	1134 bp distal
Rr653202	regulatory region 653202	1738 bp distal
Rr653203	regulatory region 653203	1119 bp distal
Rr653204	regulatory region 653204	1063 bp distal
Rr653205	regulatory region 653205	1064 bp distal
Rr653206	regulatory region 653206	493 bp distal
Rr653207	regulatory region 653207	within coordinates
Rr653208	regulatory region 653208	425 bp proximal
Tssr2367	transcription start site region 2367	1132 bp upstream
Tssr2368	transcription start site region 2368	168 bp downstream
Tssr68492	transcription start site region 68492	1737 bp downstream
Tssr74253	transcription start site region 74253	1183 bp upstream
Tssr74254	transcription start site region 74254	294 bp downstream