rs259566554 SNP Detail

Summary

• ID
  rs259566554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59251536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTATCTG ATTGCTGCTG
  CTGCTGCTGC TGCTGGAATG CTCTTCCTTC TCCCTCAATA GTATAGGTTA GTTAGTTCTC
  AAACTCACCT AAACTTACAA GTACTAATCG ATCACTCCTT CTTTCCGACG TCCCAGGCGT
  TTCTCCTCAA ATTGCTTGCT TTGCACAAAC ACGTCATCAG TGTTTATGAA AGCGTCCCAG
  R
  CTACATATAA TCCTTCCCGC TCCTTTTGCC TGGCTTCAGT CACTGAAGCG ATGTTCCCTT
  GGTCGCTGCT TTTGTCCCAA CTCCCCTCCA GTACTTTCCT TTTCCTGGAC CCTTCTGCCC
  ATCCCACCCT CTGTCTCGCC CTGAACCCCA GCTCCCACAT CTACCAGACT CTCTGGGTCC
  CTTCACTTCC CGAGGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358117606	MGP_WTSI_3_59148037	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259566554					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358117606	MGP_WTSI_3_59148037	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59251536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13208	CpG island 13208			184 bp proximal
Gm38186	predicted gene, 38186			within coordinates
Igsf10	immunoglobulin superfamily, member 10			Intron
				mRNA-UTR
Rr577348	regulatory region 577348			within coordinates
Rr577349	regulatory region 577349			34 bp proximal
Rr577350	regulatory region 577350			154 bp proximal
Rr577351	regulatory region 577351			269 bp proximal
Tssr33412	transcription start site region 33412			124 bp upstream
Tssr33413	transcription start site region 33413			69 bp upstream
Tssr33414	transcription start site region 33414			39 bp upstream
Tssr33415	transcription start site region 33415			15 bp upstream
Tssr33416	transcription start site region 33416			37 bp downstream
Tssr33417	transcription start site region 33417			231 bp downstream
Tssr33418	transcription start site region 33418			255 bp downstream
Tssr33419	transcription start site region 33419			323 bp downstream