rs259564062 SNP Detail

Summary

• ID
  rs259564062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102970127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAAGCT TAAGGAAGTT
  TTGTGCAGAC TACTATGTGG AGGGTGTTGG CAAGCAGACG ATTCAGCCAG CTATTCCAAT
  GCAGAAATGA CTGTTAGGTC TGGAGAGCAC AGCTACTTGA CGAAGTGAAG TGGCCCTCAA
  TGCTTGGCAG TAAAGATGCA GGACCCATAC CGAGGAAGTG CAAGGGTTGC AGTTTAATGA
  R
  CTGGGATGGC TGCGGACTGG AAACAAAGGG GCAGTAAATT ACAGCGCTGA GGATGAATTT
  CGAGCACACT GGGTGTAATT GCTTCAGTTT TGTTTTCTTG AGAGAGATCT TGAAGAGATA
  AGAAAACTTG TGAATCATGC ATATACTTAA CTTTGAAAGG CACAAGGCAA CAACGAAGTG
  AACCACCTGC CTCCACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362654200	MGP_WTSI_4_102785535	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259564062					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362654200	MGP_WTSI_4_102785535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102970127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			967 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			1460 bp upstream
Rr596355	regulatory region 596355			within coordinates
Rr596356	regulatory region 596356			975 bp proximal
Rr596357	regulatory region 596357			1476 bp proximal
Rr596358	regulatory region 596358			1615 bp proximal
Tssr38082	transcription start site region 38082			1455 bp upstream
Tssr38083	transcription start site region 38083			1472 bp upstream
Tssr38084	transcription start site region 38084			1532 bp upstream
Tssr38085	transcription start site region 38085			1782 bp upstream
Tssr38086	transcription start site region 38086			1846 bp upstream
Tssr38087	transcription start site region 38087			1986 bp upstream
Tssr42583	transcription start site region 42583			1280 bp downstream
Tssr42584	transcription start site region 42584			1292 bp downstream
Tssr42585	transcription start site region 42585			1308 bp downstream
Tssr42586	transcription start site region 42586			1375 bp downstream
Tssr42587	transcription start site region 42587			1386 bp downstream
Tssr42588	transcription start site region 42588			1427 bp downstream
Tssr42589	transcription start site region 42589			1632 bp downstream
Tssr42590	transcription start site region 42590			1882 bp downstream