rs259553978 SNP Detail

Summary

• ID
  rs259553978
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152448867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caaccctgg gccacacaga gagctcttgt
  ctcaaaGCTC TCTCTCTTTC CTCTCTCTCA Tttgagagca ctggctgctc ttgcagaggg
  cctgggttag gttctcagta cccacaacac tgcttactgc ctcctgtaat tctggttctc
  A
  gtgatcagat accctctcct ggcttctgtg ggtaccagga acatatatgg tacacataca
  tgcatgcaaa catgcataca tgcatacatg catgcaaaca cacatacata catacataca
  tacaagcata caCAttttgt ttttgagaca                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434341	CHEV_4_151738519	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259553978					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152448867 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	Intron
Rr605861	regulatory region 605861	870 bp proximal