rs259544230 SNP Detail

Summary

• ID
  rs259544230
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117738935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG ATGAGCCCCA CCTGCTTCCG
  M
  CTTGGCTGCT CATTCCCAGC TCCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280667	CHEV_4_117554343	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259544230					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117738935 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2			Intron
				Noncoding-Transcript-Variant
Gm12841	predicted gene 12841			1812 bp upstream
Rr598245	regulatory region 598245			472 bp proximal
Rr598246	regulatory region 598246			1265 bp proximal
Rr598247	regulatory region 598247			1364 bp proximal
Rr598248	regulatory region 598248			1480 bp proximal
Rr598249	regulatory region 598249			1847 bp proximal
Tssr38640	transcription start site region 38640			1804 bp upstream
Tssr38641	transcription start site region 38641			1859 bp upstream
Tssr43002	transcription start site region 43002			1690 bp downstream