rs259538452 SNP Detail

Summary

• ID
  rs259538452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90574206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCCTCA GAGCAATCTC
  TCTAACCCCA GATATTTTTG TTTTGAGACT GGGTCTCACT ATGTAGCCCT AACTCTAGTG
  GAACTCGGAG ATCCACTTGC CTGGCCTATT ATTCTTGCTC TTTTTTTTTT TTTTCTCCTC
  GAGACAGGGT TTCTCTGTAT AGCCCTGGCT GTCCTGGAAT TCACTTTGTA GACCAGGCTG
  K
  CCTGGAACTC AGAAATCCGC CTGCCTCTGC CTCCCAAGTG CTGGGAATAA AGGCATGTGC
  CACCACTGCC TGGCTTGTTG TTTGTTTTTT GAGACAGGGT TTCTTTTTTG TTTTTTGTTT
  TTTTGGTTTT TCGAGACAGG GTTTCTCTGT GTAGCCCTGA CTGTCCTAGA ACTCACTCTA
  TAGACCAGGT TGGCCTCGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354801452	MGP_WTSI_2_90584019	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259538452					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354801452	MGP_WTSI_2_90584019	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90574206 () rs orientation: forward

Symbol	Name	Function Class
Fnbp4	formin binding protein 4	1587 bp upstream
Gm75370	predicted gene, 75370	396 bp downstream
Gm75673	predicted gene, 75673	972 bp downstream
Rr367222	regulatory region 367222	1299 bp upstream
Rr560566	regulatory region 560566	414 bp proximal
Rr560567	regulatory region 560567	1335 bp proximal
Rr560568	regulatory region 560568	1956 bp proximal
Tssr18764	transcription start site region 18764	1593 bp upstream
Tssr18765	transcription start site region 18765	1638 bp upstream
Tssr18766	transcription start site region 18766	1677 bp upstream
Tssr25135	transcription start site region 25135	1345 bp downstream
Tssr25136	transcription start site region 25136	1408 bp downstream