rs259530386 SNP Detail

Summary

• ID
  rs259530386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5496977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCTTTG CCATTGGACC
  TCGAAAGCAA GGACCACCCT ACAGTTTTAT CCACTTTCTT CTTAGCGAAC AGCTCAAGTT
  TAGAAACTGC CTAAATAGGC TTATTATTAA TGTGGTGGAA AATCCCAGTT CACTTCTCTC
  CTGTAACACT TTCTACCTGT TAATTAAATG CAAACTAAAG AGCGATTTGC TGAGGGTTTG
  R
  CTGGCCCTGT AGTCCCCCTT CCCTGTCATT CCCCTCTTTC TCTAAGGCCT TCTAGTTTGC
  TCTTGACCGC CCTCCACTCC CCAGTCTGCT CCAAAAGCTC TTTCTTCATT GCGGCTGCCC
  TCCTTCCAAA AAGCAGCCTT TGTCACTAGC AGGCACCAGT AGCATATTTT AGTTATTTGG
  GCTCTTTCAT TTCCCAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729291	CHEV_6_5446977	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259530386					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5496977 () rs orientation: forward

Symbol	Name	Function Class
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	699 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	178 bp distal
Rr626153	regulatory region 626153	1739 bp proximal
Tssr59753	transcription start site region 59753	1125 bp upstream
Tssr59754	transcription start site region 59754	1096 bp upstream
Tssr59755	transcription start site region 59755	1045 bp upstream
Tssr59756	transcription start site region 59756	687 bp upstream
Tssr59757	transcription start site region 59757	661 bp upstream