rs259494032 SNP Detail

Summary

• ID
  rs259494032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137494265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCATTCCA GTACTTGGGA GCTGGAGGCA GAAGGGTCCA
  GGAGTTCAAG GACATCCTGA GCTACTGTGT TGTCAACAGA CTCCAGAATC ACCCAGGAGA
  Y
  GGGCCTTTGA GTGTGCCTGT GGGGGATTAT TAAGATTAAA CTTAATTTCA GAGATCTGGT
  GACAGCATTC CCAGGCCAGA GTACAGGGTA AGGAGAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367248	CHEV_4_137322869	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259494032					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137494265 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			528 bp upstream
Rr602708	regulatory region 602708			539 bp distal
Rr602709	regulatory region 602709			295 bp distal
Rr602710	regulatory region 602710			1874 bp proximal
Tssr44134	transcription start site region 44134			510 bp upstream
Tssr44135	transcription start site region 44135			488 bp upstream
Tssr44136	transcription start site region 44136			453 bp upstream