rs259493122 SNP Detail

Summary

• ID
  rs259493122
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110250140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGAGA CAGCCTAAAG
  ACTGCGACTT CCTGGAGGAT GGGGTGAGTC ACCTTCTTCC AGATCCTAGA CTGCCTCCTG
  GAGGAAGAGA AGTCCCCTCC TCTCTTGCCT TCTTTCATGT CACCTGACCA CTTCACCAGC
  AGTTGTAATG TTGAAGCCTT TTTCAAAATC AGATTTTTGG GCCCTGAGAT GGTTTGGTGG
  W
  TTGAAGGGAC CCTGGGACCC ACATGGTGGA GAGATCTGAC TTCCACAGCT GTTCTCTAAC
  TTCTGTAGAC ATTACTCTCA CACAACCCAA GTAATCAAAG GAAAAAAAAA AAGATTCTCT
  TTAATACCCT TTCTTACTAT AAATTATTGC AATATCTCAC TACAACAGCA TCATGTGGCT
  CAGTGATAGA GTCTTATTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902765	MGP_WTSI_9_110323576	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259493122					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902765	MGP_WTSI_9_110323576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110250140 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	Intron
Tssr3020	transcription start site region 3020	183 bp downstream
Tssr3021	transcription start site region 3021	217 bp downstream
Tssr3022	transcription start site region 3022	660 bp downstream
Tssr3023	transcription start site region 3023	1296 bp downstream
Tssr3024	transcription start site region 3024	1319 bp downstream
Tssr3025	transcription start site region 3025	1398 bp downstream
Tssr3026	transcription start site region 3026	1454 bp downstream
Tssr3027	transcription start site region 3027	1537 bp downstream
Tssr3028	transcription start site region 3028	1615 bp downstream
Tssr3029	transcription start site region 3029	1630 bp downstream
Tssr3030	transcription start site region 3030	1651 bp downstream
Tssr3031	transcription start site region 3031	1824 bp downstream
Tssr87360	transcription start site region 87360	1263 bp downstream
Tssr87361	transcription start site region 87361	1210 bp downstream
Tssr87362	transcription start site region 87362	955 bp downstream
Tssr87363	transcription start site region 87363	239 bp downstream
Tssr87364	transcription start site region 87364	188 bp downstream
Tssr87365	transcription start site region 87365	154 bp downstream
Tssr87366	transcription start site region 87366	621 bp upstream
Tssr87367	transcription start site region 87367	638 bp upstream
Tssr87368	transcription start site region 87368	1194 bp upstream
Tssr87369	transcription start site region 87369	1219 bp upstream
Tssr87370	transcription start site region 87370	1252 bp upstream
Tssr87371	transcription start site region 87371	1291 bp upstream
Tssr87372	transcription start site region 87372	1347 bp upstream
Tssr87373	transcription start site region 87373	1377 bp upstream
Tssr87374	transcription start site region 87374	1418 bp upstream
Tssr87375	transcription start site region 87375	1436 bp upstream
Tssr87376	transcription start site region 87376	1458 bp upstream
Tssr87377	transcription start site region 87377	1466 bp upstream
Tssr87378	transcription start site region 87378	1516 bp upstream
Tssr87379	transcription start site region 87379	1566 bp upstream
Tssr87380	transcription start site region 87380	1779 bp upstream
Tssr91614	transcription start site region 91614	1109 bp upstream
Tssr91615	transcription start site region 91615	1075 bp upstream
Tssr91616	transcription start site region 91616	198 bp upstream
Tssr91617	transcription start site region 91617	173 bp upstream
Tssr91618	transcription start site region 91618	153 bp upstream
Tssr91619	transcription start site region 91619	1233 bp downstream
Tssr91620	transcription start site region 91620	1337 bp downstream
Tssr91621	transcription start site region 91621	1432 bp downstream
Tssr91622	transcription start site region 91622	1474 bp downstream
Tssr91623	transcription start site region 91623	1936 bp downstream