rs259488272 SNP Detail

Summary

• ID
  rs259488272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4046055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTTATT ACAAGGGGCA
  AAAGCACTCT GAATCCTCTG GGATTTCAGA GGGGCAATGC TATGGCCCCT AGAGACAAAT
  CCTACTTGGG CCGCCTAGTA GATGTAAGCC ACTTACACAC ACACACACAC ACACACCGCC
  CCTCCCCCCA CTCCCCACCC CGGTCCCAAC GACCACGTCT GTAAAGCAAA ATGGGTGAGA
  R
  TGGAGAGATG GCTCAGTGGT TAAGAGCGCT TACAGCTCTT CCAGAGGGCC GGAGTTCCAG
  TCCCAGCATC TACACGGGTG TCTCACAGCC ATCTGTAACT CCATCTCGGG GGAATCTGAC
  ACTTCTGGTT TCCACAGGCA GCACCCACCT CCCCCAAACA CACACACCTA TACATTCACA
  CATGAGACAC ACAGATAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382253148	MGP_WTSI_11_3996058	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259488272					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382253148	MGP_WTSI_11_3996058	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4046055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2503	CpG island 2503	527 bp distal
Cpgi2504	CpG island 2504	373 bp proximal
Gm51935	predicted gene, 51935	1313 bp downstream
Gm72847	predicted gene, 72847	within coordinates
Mtfp1	mitochondrial fission process 1	624 bp upstream
Rr369115	regulatory region 369115	35 bp upstream
Rr441723	regulatory region 441723	1486 bp distal
Rr441724	regulatory region 441724	869 bp distal
Rr441725	regulatory region 441725	800 bp distal
Rr441726	regulatory region 441726	120 bp distal
Rr441727	regulatory region 441727	881 bp proximal
Rr441728	regulatory region 441728	1924 bp proximal
Sec14l2	SEC14-like lipid binding 2	984 bp downstream
Tssr100092	transcription start site region 100092	798 bp upstream
Tssr106530	transcription start site region 106530	737 bp upstream
Tssr106531	transcription start site region 106531	719 bp upstream
Tssr106532	transcription start site region 106532	615 bp upstream