rs259482927 SNP Detail

Summary

• ID
  rs259482927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48714550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCCTGC TGCCAGACCC
  ACCGTCGTCA TTGCTATTTT AAATTCTTTC ACTCGGAATT TCAAGAAGTT CCATGCCTTC
  GTGATACCAT ATCATTTAGT GAACAGGATC TGGGAATCTC AAAATGAAAA TGCTGGGGGA
  AAAAAAAGGG AGCAAGAAGT GTCACAATTT CTCTTTTAAC AAGTAGTGAG ACTAGGTAGG
  Y
  ATGGGTTTCC GTAGTGTAGT GGTTAGCGCG TTCGCCTACC AAAGCGAAAG GTCCCCGGTT
  CGAAACCGGG CGGAAACAAA AGGTGAAAAC TTTCTACGAC TAGTGGATGT TTTAAATTTC
  ATTAATTGAT TGTTGGAGAA AGAGACAGAG AGGCAGAGAC ACCACACCCC CTGCCTATGC
  CTCAGGATGC AAGAAGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664655	CHEV_11_48637225	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259482927					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48714550 () rs orientation: forward

Symbol	Name	Function Class
Cdk2ap1rt	cyclin dependent kinase 2 associated protein 1 retrotransposed	1623 bp downstream
Cpgi2780	CpG island 2780	1971 bp distal
Cpgi2781	CpG island 2781	467 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	5 bp upstream
Rr446122	regulatory region 446122	within coordinates
Rr446123	regulatory region 446123	1932 bp proximal