rs259481646 SNP Detail

Summary

• ID
  rs259481646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148694977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCCCTG CGGCCTGGGG
  CACGACTCTG CCGCCAGCCC TTCCTCACAT GTCGGGTCTC CCGGGCTGGG GGGCGGGAGA
  GGGGGCGCCC GGCGGATGCA GGAGGTGAGG AACTCGGGTT CGGGGAGAGC GACGGGAGGA
  GCGAGGAGGA GCAGCGCCGC TGCACAGCCG CGGAGGGAGG CCGGTCCCCT CAACAATCGC
  Y
  AAGAATCCTC CGGTAAGCTC CCGATGGCGC TCGGGCACCT CTGCGTGCGG GTGCGCGCGC
  GCGTGTGTGT GTGTGTGTGT GCAAGTGTGT GTGCCTGTGA GTGCGAGTGT GTGTGAGCGT
  GTGTGAGCCG GGAGAGAGTG AGAGCTAGAG AAGAGCAGGG AGAGCAGGGA GCGAGAGGCG
  GGGAGCCCGA AGTCCTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360182865	MGP_WTSI_3_148652305	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259481646					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360182865	MGP_WTSI_3_148652305	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148694977 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adgrl2	adhesion G protein-coupled receptor L2			Intron
				mRNA-UTR
Cpgi13930	CpG island 13930			within coordinates
Gm43573	predicted gene 43573			within coordinates
Rr587240	regulatory region 587240			1697 bp distal
Rr587241	regulatory region 587241			25 bp distal
Rr587242	regulatory region 587242			within coordinates
Rr587243	regulatory region 587243			1204 bp proximal
Tssr36077	transcription start site region 36077			244 bp upstream
Tssr36078	transcription start site region 36078			234 bp upstream
Tssr36079	transcription start site region 36079			7 bp downstream
Tssr36080	transcription start site region 36080			37 bp downstream
Tssr36081	transcription start site region 36081			64 bp downstream
Tssr36082	transcription start site region 36082			102 bp downstream
Tssr36083	transcription start site region 36083			172 bp downstream
Tssr36084	transcription start site region 36084			191 bp downstream
Tssr36085	transcription start site region 36085			215 bp downstream
Tssr36086	transcription start site region 36086			371 bp downstream
Tssr36087	transcription start site region 36087			645 bp downstream
Tssr36088	transcription start site region 36088			759 bp downstream
Tssr36089	transcription start site region 36089			1178 bp downstream
Tssr36090	transcription start site region 36090			1228 bp downstream