rs259470453 SNP Detail

Summary

• ID
  rs259470453
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126390420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCAAGG CTGGCAGCCC
  CAGGCAGTAG CTGCGAGCCG GGGGACGTTG GACCCGGGTC TGGGAGCAGT AAACGCGAAC
  CGCGCCCAGA TGCAAGGGTT GCTTCCCTCT CTCGGCTTCC CCGGCCTCGC GGCCATCCCG
  CCCGGGTAGA GGCATCCGGG TTGTGGGAGC TTCGAGTGGT CTCTCATCTT TCCGCCCTTC
  K
  TGGGTCACTG CGACATCTCA GTCCCGTCCC CTTAAGCGCG CTCCCTGCTG CTCCGCGCAT
  CTCCCTTCGG TCTCCCTAGA CGGCTGCGGG AGAGCAGCCC GAAGGGACGC GGCTGGAGTC
  GCTAGAGGGA GGTGTGGGGC CGCCGAGGAG GGGGCTTCGC TGGGCGGGGA GAGGAGGGAG
  GAGGCGCCGG GGAGGAGCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359614783	MGP_WTSI_3_126299689	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259470453					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359614783	MGP_WTSI_3_126299689	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126390420 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			307 bp downstream
Rr584646	regulatory region 584646			within coordinates
Rr584647	regulatory region 584647			115 bp proximal
Rr584648	regulatory region 584648			227 bp proximal
Rr584649	regulatory region 584649			654 bp proximal
Tssr31566	transcription start site region 31566			428 bp downstream
Tssr31567	transcription start site region 31567			399 bp downstream
Tssr31568	transcription start site region 31568			352 bp downstream
Tssr31569	transcription start site region 31569			42 bp upstream
Tssr31570	transcription start site region 31570			190 bp upstream
Tssr31571	transcription start site region 31571			222 bp upstream
Tssr31572	transcription start site region 31572			331 bp upstream
Tssr31573	transcription start site region 31573			467 bp upstream
Tssr31574	transcription start site region 31574			528 bp upstream
Tssr31575	transcription start site region 31575			644 bp upstream