rs259446591 SNP Detail

Summary

• ID
  rs259446591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131872104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCTGCA GTTCTCTCCC
  CACCCCTCTT CTCTTGCCTT TCTTTCCCTT CTCCCCCTCC CTCCCCTCTA GGGGGCGGAG
  CTTCTCCCCT CCCTTCAAGA CAGACAATGC TGTGGCTTCG CGTCGCCTCC TCCCTTCATC
  TCTACCCCCC CCCTCCCCGC GTACCCCCAC CCCACCTCGC GCGGGCTGCC AGCGTTTCTT
  Y
  TCAGCAGGCC AGAGTGCATG AGGAGGAGGA GGCGGAGAGC GTGGGTGGAG GGAATAAGGT
  GCTGCCTCTC ACCCCATCGC GCCTGCCCTC TCCAAGCCAC GCCGAGATTT AGCCCAAGCT
  CTTCAGTTCG CCTGGCTCTG TGACAGTCAC TCCCAGGGAG CAGCCCGCCT AGAGAATGCA
  GATTTCCTAG CAGAGGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355696538	MGP_WTSI_2_131855920	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259446591					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355696538	MGP_WTSI_2_131855920	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131872104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12299	CpG island 12299	within coordinates
Gm31179	predicted gene, 31179	267 bp upstream
Gm75461	predicted gene, 75461	within coordinates
Rassf2	Ras association (RalGDS/AF-6) domain family member 2	mRNA-UTR
Rr367316	regulatory region 367316	708 bp downstream
Rr397324	regulatory region 397324	within coordinates
Rr565379	regulatory region 565379	1689 bp distal
Rr565380	regulatory region 565380	within coordinates
Rr565381	regulatory region 565381	119 bp distal
Tssr20293	transcription start site region 20293	1830 bp downstream
Tssr20294	transcription start site region 20294	198 bp downstream
Tssr26436	transcription start site region 26436	1000 bp upstream
Tssr26437	transcription start site region 26437	979 bp upstream
Tssr26438	transcription start site region 26438	380 bp upstream
Tssr26439	transcription start site region 26439	371 bp upstream
Tssr26440	transcription start site region 26440	362 bp upstream
Tssr26441	transcription start site region 26441	340 bp upstream
Tssr26442	transcription start site region 26442	283 bp upstream