rs259409723 SNP Detail

Summary

• ID
  rs259409723
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100589515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGAGGG TTGTGTGGAT
  GGGGGTTGGA GTGTGTGGAT GAGGGGTGGG GTGGAATTGT GTTGATGGAG TGGTAGTGGT
  CTTGAGTGGA CGGAGGGTGG AGTTATATAG ATTATGGTGG GGGTGGGCTT GTGTGGATGA
  GGGGTAGGGT TGTATCGATG GGGGGAGGGG AGGGACTGGA GCAGCTCAAG TCACTCGGCT
  R
  CTGCTCCTGT ACCTAAGCCG GGAGGCTCAC AACTGCCTGT AACTCCAACT TCAGAGGATC
  TGATATCTGT GGTGTCCATG GCAACTGCAC ACATATGTGC ATGCACAGGC ACACATGCTG
  CAGATGTCTG CATCGTTAGG AGCACTGGCT GCTCTTTTAG AGGATCTAGG TTCAAGTCCC
  AGCACCCACA TGACAACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372529661	MGP_WTSI_7_108088822	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259409723					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372529661	MGP_WTSI_7_108088822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100589515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19492	CpG island 19492			1046 bp distal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6			Intron
				Noncoding-Transcript-Variant
Tssr68182	transcription start site region 68182			1392 bp downstream
Tssr73798	transcription start site region 73798			1863 bp upstream
Tssr73799	transcription start site region 73799			1489 bp upstream
Tssr73800	transcription start site region 73800			1418 bp upstream
Tssr73801	transcription start site region 73801			1292 bp upstream
Tssr73802	transcription start site region 73802			1259 bp upstream
Tssr73803	transcription start site region 73803			1183 bp upstream
Tssr73804	transcription start site region 73804			1164 bp upstream
Tssr73805	transcription start site region 73805			337 bp upstream