rs259365720 SNP Detail

Summary

• ID
  rs259365720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107346480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCTAAA TAAATGTCTG
  CTTGTGCAGT AAATGTTTAT GTGTGCCACT CTATCCCAGC CCCTGAGCCA GGAGACAACT
  GAGAGGAAAC CCAGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGGA
  GTGTAGGCTT CTGGGAGTGG TGGGTGTCCA CAGGGAGGGG CCTTGGAAAG CTCCCTGGAG
  R
  TATGCCCGAG AGGCAGTCGG GGATTGACGC CAGGTTCCCA CCTCTCTCTC TTGGCTGCTT
  GGCTCACTCT CTCCTGAGGC GTACTCAGAA GGGGCCGGCT TTCCTGAGAC AGGCCATTGT
  CTTGGAGGTG GCCCTGATGC CACTCAGGCA CTTTCAGAGC CATAGCATCC CAGCCCCATT
  GAAAGGTTGT CTAAGCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321248459	CHEV_4_107161888	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259365720					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107346480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	163 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	within coordinates