rs259355824 SNP Detail

Summary

• ID
  rs259355824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144130252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGATCAG GCAAATTAAC
  CTTATCCATC ATCAGCCAAC AGTGGGTGTG TGGAGGAAAC AAGCCGTCCA TCATTTCATT
  TGATCAGGTG CTCAGCCACA TTTCTGAGAC CAGTAGTATC TGCATCTCCT TCCCATTGTA
  GGTAGTCTGT CTAAACTCCA CCCCCCCACC CCCCCACCCC TCCACCCCCC CCAGCCCCCA
  M
  CCCCAGTTCC TGGCACCAGA CAGGCTTGGC CCAGTATAAA AGGGGCTGTT TGGCCCCTCC
  TCTCTCTCTT ACCCTATTAC ATTCTTGCCT TTCTCTTGCC TCTTGCCCCC TTACTCCCAA
  TTCCCTTTCC CCCTCTCTCC ACGTGGCCAT AGCCGGCCCC GATTTCTCTA CTCTCTCCTT
  CTCTCTGCCT TTCTCTGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
ss363582156	MGP_WTSI_4_143993585	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	C	A	A	C	A	A	A	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
rs259355824					SNP	C	A	A	A	C	A	A	C	A	A	A	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363582156	MGP_WTSI_4_143993585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144130252 () rs orientation: forward

Symbol	Name	Function Class
Pramel13	PRAME like 13	Intron
Pramel13os	PRAME like 13, opposite strand	62 bp upstream
Rr604225	regulatory region 604225	696 bp proximal
Rr604226	regulatory region 604226	1197 bp proximal
Tssr40137	transcription start site region 40137	63 bp upstream
Tssr44454	transcription start site region 44454	42 bp upstream