rs259352929 SNP Detail

Summary

• ID
  rs259352929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGTCCC GGCAAGAGCA
  GAGCCCGCTG CCCTGTTCTC GCCTAGGCAT CCCTCCAGTC ACTCCCCTCC AGTCACTCGG
  TACCGACACA GCAACGGGAA ACGATGGAGC TAGACAGATG GGCGCAGTTG GGGCTGGTGT
  TCCTGCAGCT CCTTCTCATC TCATCGTTGC CAAGAGGTAC TGTTAGTGAC CAGGAGCCCT
  Y
  TGCGGGGTCT GATGGGGAGC TGGACAGGTT GGGGTTGTTC CAGCGATAAT CTGGGGTTTC
  TGGCTGGGAG CTGGATGCTC CCGTTGTCCG CTTTAAGAAC AGGATGATAT TCCTAATTGT
  GGGACTAAAC TATGTCTAAG CTAAAGAAGA GAGCTCTTGT GCTATCTATC TATCTATCTA
  TCTATCTATC TATCTATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320438751	CHEV_2_102390446	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259352929					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380634 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11977	CpG island 11977			26 bp distal
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561703	regulatory region 561703			267 bp distal
Rr561704	regulatory region 561704			614 bp proximal
Tssr19094	transcription start site region 19094			209 bp downstream
Tssr19095	transcription start site region 19095			176 bp downstream
Tssr19096	transcription start site region 19096			161 bp downstream
Tssr19097	transcription start site region 19097			121 bp downstream