rs259343808 SNP Detail

Summary

• ID
  rs259343808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116114260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAAGCTG AAATGGTTGA CTACAAAGAG
  ATGCTGCCAT CCCTAGGGAA GGCTCTTAGG CACAGCTATA AAGATGAGAG AATGTATCTC
  AAGACTTCTA AGAGCAAGAC TTATTTTAAT TACGCTACTT AGCACAGGCT TGTGGAGCAG
  R
  CAGCCCGAAA TACACTCAAG CTAAGCTGTG ATCAGTAAGT TGTGATTACC CACTTCTGAT
  AGATGTAACC TGGCAAGTGG AACAGCTATT ATTTACTGTG ACATCACACA CATAGAACAT
  GGTCAAAATT GTGAAGGCTC CTCCAGCCCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321917236	CHEV_6_116087317	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259343808					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116114260 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	121 bp upstream
Rr637158	regulatory region 637158	823 bp distal
Rr637159	regulatory region 637159	1154 bp distal
Rr637160	regulatory region 637160	864 bp distal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	118 bp upstream