rs259329574 SNP Detail

Summary

• ID
  rs259329574
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118456712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCGCGAT GACTCCGTGT GTGATCACGT
  TATGAAGTTT GGCTCTGAGT ACCTCACTGT TGAGCGCTGC GCTGCTTCCC TAAGGCCTGA
  TCTTTAAGGG GATGATTGAA CAAGCAATGG GCACCCTGCG GAGTTAGACA GAAGGCCGTC
  W
  GAGGGTGCGC AGTGTGTACG GTGGGGTAGC TTAAATACTT GAAGTTTACA TCCAAGGAGC
  TTGCAATTTT GTCTTAGGAT TACTACCTTT CAAAACTATG TAAACGATAA CACGAAACGC
  GAGAAACTAA AAAAATATGT ACAGTATATA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924630	CHEV_6_118429769	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259329574					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118456712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	within coordinates
Rr637483	regulatory region 637483	1430 bp distal
Rr637484	regulatory region 637484	442 bp distal
Rr637485	regulatory region 637485	within coordinates
Rr637486	regulatory region 637486	758 bp proximal
Rr637487	regulatory region 637487	919 bp proximal
Tssr62662	transcription start site region 62662	433 bp upstream
Zfp9	zinc finger protein 9	mRNA-UTR