rs259301914 SNP Detail

Summary

• ID
  rs259301914
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82939354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAAACCT CAACTGTCAA
  AAAACAAGTA ACCAAGACCT ATAAAATGGC AGACGAGGCA GGAAGCGAAG CTCACCGGGA
  AGGAGAAACT CGCAACACTA AGAGGGGCCG TGCCAGAGCT CGCCCAACGA GAGGTATCGA
  CACTTAACTT TCGGGAGATT CCCCTGACAC CCCCCCCCCC CCTAGATTAA GTTAACCATT
  W
  CTGCGAAGTG CTTACCAGGC ACGCTGCACC CGTTTCCTAA CCTCCTTTAG TGTTTTGTTG
  GAATCTCATT TTTTTTTTGG TCAACTTTTC ATGCTAGACT GTACGTTCCT TGGGGGCAGG
  GACTTGACCA TGTGTCTATT TCTGTAATTC CCAAATGCCT AACAGTGCAG TCATTTCTCA
  ATAAATACAT TTTAAATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676714	MGP_WTSI_3_82835969	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259301914					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676714	MGP_WTSI_3_82835969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82939354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fga	fibrinogen alpha chain			Intron
				mRNA-UTR
Rr375250	regulatory region 375250			342 bp downstream
Tssr917	transcription start site region 917			346 bp downstream
Tssr29668	transcription start site region 29668			1838 bp downstream
Tssr29669	transcription start site region 29669			1788 bp downstream
Tssr29670	transcription start site region 29670			1751 bp downstream
Tssr29671	transcription start site region 29671			1202 bp downstream
Tssr29672	transcription start site region 29672			1109 bp downstream
Tssr29673	transcription start site region 29673			1062 bp downstream
Tssr29674	transcription start site region 29674			1028 bp downstream
Tssr29675	transcription start site region 29675			1022 bp downstream
Tssr29676	transcription start site region 29676			1008 bp downstream
Tssr29677	transcription start site region 29677			993 bp downstream
Tssr29678	transcription start site region 29678			918 bp downstream
Tssr29679	transcription start site region 29679			859 bp downstream
Tssr29680	transcription start site region 29680			835 bp downstream
Tssr29681	transcription start site region 29681			733 bp downstream
Tssr29682	transcription start site region 29682			702 bp downstream
Tssr29683	transcription start site region 29683			671 bp downstream
Tssr29684	transcription start site region 29684			632 bp downstream
Tssr29685	transcription start site region 29685			586 bp downstream
Tssr29686	transcription start site region 29686			497 bp downstream
Tssr29687	transcription start site region 29687			444 bp downstream
Tssr29688	transcription start site region 29688			419 bp downstream
Tssr29689	transcription start site region 29689			395 bp downstream
Tssr29690	transcription start site region 29690			367 bp downstream
Tssr29691	transcription start site region 29691			317 bp downstream
Tssr29692	transcription start site region 29692			299 bp downstream
Tssr29693	transcription start site region 29693			272 bp downstream
Tssr29694	transcription start site region 29694			226 bp downstream
Tssr29695	transcription start site region 29695			213 bp downstream
Tssr29696	transcription start site region 29696			192 bp downstream
Tssr29697	transcription start site region 29697			165 bp downstream
Tssr29698	transcription start site region 29698			15 bp downstream
Tssr29699	transcription start site region 29699			32 bp upstream
Tssr29700	transcription start site region 29700			45 bp upstream
Tssr29701	transcription start site region 29701			77 bp upstream
Tssr33800	transcription start site region 33800			924 bp upstream
Tssr33801	transcription start site region 33801			561 bp upstream
Tssr33802	transcription start site region 33802			437 bp upstream