rs259299569 SNP Detail

Summary

• ID
  rs259299569
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141408502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTGACC GTCTACTAAA
  GCTTCCTTCG CCAAGTTCCT ACTCTCATCC CGACCCGTCG ACATCTGAAG CTCAGCCCGC
  CAGATGCAGA CATCGGCTGC TGCAGAGGGC TGAACTAGCA CATCTGGAAG CGGCCGTATC
  TCCAGCCCTT CAGCTTGAGT GTGAGCTTTA CAAGAAAATC CTTTGGTGCA TAAATGGAGA
  C
  CACTGCTGGA GGAAAGCAGT CACCACAGAA CGCCCTGACA GTGGTCTGGC CGAGGAGCTG
  CCCTTGCTGT TACAGTTGGG ATCTGACAGG ATCAACACTG GGTTCACACT GATGTGATCT
  TACTCCTACA GTGACTTAAG TGAAAGCTGA CTCCAAAGTA CCACTAATGT GATGTTCCTC
  AACGCCTTCT GTTCTAGAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363526684	MGP_WTSI_4_141237106	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259299569					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363526684	MGP_WTSI_4_141237106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141408502 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	919 bp downstream
Rr603857	regulatory region 603857	1846 bp distal
Rr603858	regulatory region 603858	602 bp proximal
Tssr44357	transcription start site region 44357	1640 bp upstream